Mac OS

Mandala

Mantis

Mantis is a biological database manager that features the ability to store taxonomic and specimen data, images and sounds, and it has built in managers of citations, specimen loans, and addresses. It has been designed by a practising taxonomist, for taxonomists. It is also a tool for conservationists who want to keep tract of species distribution or create simple identification tools. The emphasis of its design is on quick data entry and painless exploration of data. Mantis has a number of tools that facilitate species description, generation of taxonomic catalogues, or mapping of species distribution.

Specify 6

Specify is a research software application, database, and network interface for biological collections information. It manages specimen data such as descriptions of collecting locations, participants and determination histories as well as information about collections transactions such as loans, exchanges, accessions and gifts. Version 6 includes a much more user friendly interface. It supports multiple user connections to MySQL or a local connection to it's own internal database system. The reporting tools are also very flexible and well represented.

Biota - The Biodiversity Database manager

Biota 2 is a second generation Collection Management system succeeding Biota 1. It has several exemplary features including a versatile help system and very flexible support for non-compliant data formats. It supports images in the collection system allowing for 10 different leading image formats and an unlimited number of images linked to any one specimen, further allowing the images to be displayed as thumbnails to be opened at full size with zoom capabilities. It also offers an optional web hosting platform that allows institutions to host their collections online for web visitors to browse through. The web hosting is provided at an additional cost.

Biodiverse

Biodiverse is a tool for the spatial analysis of diversity using indices based on taxonomic, phylogenetic and matrix-based (e.g. genetic distance) relationships, as well as related environmental and temporal variations. Biodiverse supports four processes: (1) linked visualisation of data distributions in geographic, taxonomic, phylogenetic and matrix spaces; (2) spatial moving window analyses including richness, endemism, phylogenetic diversity and beta diversity; (3) spatially constrained agglomerative cluster analyses; and (4) randomisations for hypothesis testing. Biodiverse is open-source and supports user developed extensions.

Lucid3 - On-Line Player

The Online Player joins the other two Player options for Lucid3 keys – the Lucid3 Application Player and the Lucid3 Applet – to provide a great service to our clients and your end-users.

CiteULike

CiteULike is a free service to help you to store, organise and share the scholarly papers you are reading. When you see a paper on the web that interests you, you can click one button and have it added to your personal library. CiteULike automatically extracts the citation details, so there's no need to type them in yourself. It all works from within your web browser so there's no need to install any software. Because your library is stored on the server, you can access it from any computer with an Internet connection.

JabRef

JabRef is an open source bibliography reference manager. The native file format used by JabRef is BibTeX, the standard LaTeX bibliography format. JabRef runs on the Java VM (version 1.4.2 or greater), and should work equally well on Windows, Linux and Mac OS X.

BibDesk

BibDesk is a bibliographic reference manager for Mac OS X. BibDesk is designed to help organize and use bibliographic databases in BibTeX .bib format. In addition to manual typing, BibDesk lets you drag & drop or cut & paste .bib files into the bibliographic database and automatically opens files downloaded from PubMed. BibDesk also keeps track of electronic copies of literature on your computer and allows for searching your database through several keys.

 
BibDesk integrates well with TeX for creating citations and bibliographies. This integration includes a Citation search completion service, and drag & drop (cut & paste) support for adding citations to TeX files.

MorphoBrowser

The ‘MorphoBrowser’ database and interface is a 3D visualisation and searching tool for mammalian teeth, accessible over the web. It allows the user to ‘browse’ through the diverse range of tooth morphologies found in mammals, both extinct and extant. While browsing, the three-dimensional shape of the teeth can be viewed from any direction by rotating and scaling the tooth.

Morphometric Software at Suny Stony Brook

The purpose of this directory is to make available programs useful for morphometric analysis. Contributions of additional software are welcome. Contact us with suggestions for improvements and with additional contributions to the morphmet archive. Click on the categories in the contents window (at the left) to obtain lists of available software. The platform required by each program (e.g., DOS, Windows, Mac, Unix) is indicated in red for each program.

SYNTHESYS NAD: Providing itinerary related datasets and tools (for integration, visualisation and quality check)

The funtion of this service is to detect itinerary patterns in georeferenced primary data presumably collected during a collecting event.

GPSBabel

GPSBabel is a converter program aimed at GPS systems. It can convert files to and from a large number of free and proprietary formats, such as KML (Google Earth) , csv, GPX, ...

deegree - Free Software for Spatial Data Infrastructures

deegree is a Java Framework offering the main building blocks for Spatial Data Infrastructures. Its entire architecture is developed using standards of the Open Geospatial Consortium (OGC).

gvSIG

gvSIG is a tool oriented to manage geographic information. It is characterized by a user-friendly interface, with a quick access to the most usual raster and vector formats. In the same view it includes local as well as remote data through a WMS, WCS or WFS source. 



Quantum GIS

Quantum GIS (QGIS) is a user friendly Open Source Geographic Information System (GIS) that runs on Linux, Unix, Mac OSX, and Windows. QGIS supports vector, raster, and database formats. QGIS is licensed under the GNU General Public License.

Endnote

EndNote connects to Internet-based libraries of reference data (there are many free-access databases in addition to those that your organization or institution subscribes to) and locate the references for citation. EndNote stores, catalogues and indexes these references in your own custom reference databases, together with images, figures, files and links that you want to include or cite. And EndNote integrates into your word processor to make it easy to insert citations and create bibliographies and figure lists, with every entry automatically and consistently formatted in the style you, or your publishers, prefer.

GPSphotolinker

 

GPSPhotoLinker can be used to save location and GPS position data to a photo. The latitude and longitude recorded by your GPS unit while you were taking photos can be linked, and saved, to the photos. GPSPhotoLinker automatically enters the city, state and country into the metadata.

Xper2

Xper2 is a flexible and powerful knowledge management tool that helps users make an identification or diagnosis. It is a complete system that can performs management of descriptive data (creation of knowledge databases), and offers many associated tools in order to analyse those descriptive data (control and prevent of inconsistencies, comparison and analysis of taxonomic descriptions, summary of the base). Xper2 has an Editor and a Player for creating and deploying identification keys (free acces keys).

Pandora

PANDORA is a database system for taxonomic and biodiversity research projects, such as floras or monographs.

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